SeqUnwinder results (simulateOverlap_sequnwinder_uExample)

SeqUnwinder version 0.1 run completed on: 2017/01/02 00:17:02 with arguments: --species Mus musculus;mm10 --seq /storage/home/auk262/group/genomes/mm10/ --seqs simulateOverlap.fa --win 150 --minK 4 --maxK 5 --R 10 --PHO 1.7 --A 500 --S 15 --X 3 --out simulateOverlap_sequnwinder_uExample --numClusters 2 --memepath /storage/group/sam77_collab/software/bin/ --memenmotifs 3 --mememinw 6 --mememaxw 10 --minScanLen 10 --maxScanLen 15 --hillsThresh 0.1 --threads 5 --debug

Error on training data

Class TP Rare FP Rare Precision Recall F-Measure MCC ROC Area PRC Area
X#B 0.75 0.069 0.685 0.75 0.716 0.657 0.937 0.741
Y#A 0.629 0.063 0.665 0.629 0.647 0.579 0.913 0.714
X#A 0.641 0.069 0.65 0.641 0.645 0.575 0.906 0.722
Y#C 0.668 0.053 0.716 0.668 0.691 0.633 0.911 0.759
X#C 0.762 0.051 0.749 0.762 0.755 0.706 0.953 0.807
Y#B 0.625 0.079 0.612 0.625 0.618 0.541 0.896 0.682

Stratified cross-validation

Class TP Rare FP Rare Precision Recall F-Measure MCC ROC Area PRC Area
X#B 0.386 0.086 0.473 0.386 0.425 0.326 0.8 0.444
Y#A 0.501 0.075 0.571 0.501 0.534 0.449 0.845 0.579
X#A 0.605 0.117 0.509 0.605 0.553 0.457 0.861 0.57
Y#C 0.635 0.086 0.597 0.635 0.615 0.536 0.879 0.647
X#C 0.495 0.075 0.568 0.495 0.529 0.444 0.856 0.575
Y#B 0.581 0.12 0.492 0.581 0.533 0.432 0.856 0.551

Weighted K-mer model.

De novo motifs

Class Motif
X#A rc
rc
X#B rc
X#C rc
rc
Y#A rc
rc
rc
rc
Y#B rc
rc
Y#C rc
rc
A rc
rc
B rc
rc
C rc
rc
rc
X rc
rc
rc
Y rc
rc
rc

Label specific scores of de novo motifs

Extended version Compact version

Discriminative motifs. Try inputting these motifs into STAMP for validation.