MultiGPS results (Cdx2)

MultiGPS version 0.5 run completed on: 2014/03/03 04:05:51 with arguments: --geninfo genomes/mm9/mm9.info --threads 4 --exclude mm9_excludes.txt --design cdx2.design --verbose --probshared 0.99 --memepath software/meme_4.9.0/bin --mememinw 6 --mememaxw 16 --seq genomes/mm9 --out Cdx2

Binding events

Condition Events File Positional Prior Motif Motif Relative Offset
ES 5098 Cdx2_ES.events rc 5
pMN 39832 Cdx2_pMN.events rc 4
Endo 37824 Cdx2_Endo.events rc 5

Input data

Replicate ReadCount CtrlScaling SignalFraction ReadDistributionModel
ES 1 3871074.0 0.462 0.040
ES 2 2.6229174E7 2.712 0.014
ES 3 2571486.0 0.305 0.052
ES 4 1639849.0 0.210 0.040
pMN 1 1653400.0 0.206 0.097
pMN 2 2.4764409E7 2.468 0.183
Endo 1 1.7858708E7 2.883 0.115
Endo 2 1.7659721E7 2.717 0.094

Differentially enriched events

The table displays counts of events that are significantly enriched in the row condition with respect to the column condition. Click on the counts to get the differential event data file.

Diff ES pMN Endo
ES - 2530 2727
pMN 12383 - 9320
Endo 13764 8896 -

Differential enrichment scatterplots

Diff ES pMN Endo
ES
pMN
Endo

Differential enrichment MA plots

Diff ES pMN Endo
ES
pMN
Endo

Miscellaneous files

Positional prior motifs. Try inputting these motifs into STAMP for validation.

Peak-peak distance histograms (same condition)

Peak-peak distance histograms (between conditions)

Peak-motif distance histograms